NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066375_10044115

Scaffold Ga0066375_10044115


Overview

Basic Information
Taxon OID3300006019 Open in IMG/M
Scaffold IDGa0066375_10044115 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1515
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013774Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0066375_100441154F013774AGGLNDKLLELKRKKLQRQILYLRTELEETTFIFQDCLIEFEGEFRDYFKNQSNKDHKKVTTDPPEFDIPREDVNIVFRMIAQKTHPDKLVKEDTLSSTYKEKVDMYKEALGSVDNKDWSRVIEIAMELGIDVSDVKNDDSDYLNESIKALTEKTKELKSTYAWIWYHTDDKKQAKQMILQSLGLSDK*
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