Scaffold Ga0066375_10042064

Overview

Basic Information

• Taxon OID: 3300006019
• Scaffold ID: Ga0066375_10042064
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007608	Metagenome / Metatranscriptome	348	Y
F017906	Metagenome	238	Y
F024333	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066375_100420644	F007608	AGGAG	MQQENKYEKLPNSMYPKVRQQVVDRIATFEKVIEEHATAQKEALKMVYEQLEEAKNDLKYLDEVN*
Ga0066375_100420646	F017906	N/A	LSAHINSNVMDTCGIEGGEIGQFDIFRNGELFLSKEDLGRFPTKEDVDDMIEKLEPFSE*
Ga0066375_100420647	F024333	GGAG	MSLDLKDKFGIWLDEVKDKIYNVFGKDKSEKEENLYETRWVWYHTALVVELFIIIILLG