NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068875_1022672

Scaffold Ga0068875_1022672


Overview

Basic Information
Taxon OID3300006018 Open in IMG/M
Scaffold IDGa0068875_1022672 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015060Metagenome257Y
F085157Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0068875_10226721F015060AGGMVELRSGTNTGGQEPRTVEGKDPNIPEDIEVIEQGVQMANQGAQMIDPINQQGQPAEGAAQGVYVGGTYPATLARAAQGTSSYRPPQFAFT
Ga0068875_10226722F085157N/AQEYLALGGLKELLDRKALILSEQKLPAPFYWDLWGNLEHLRGTYLQWLQEHTFDVPDDEEQEVDSDSDISWETD*

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