Scaffold Ga0066382_10169757

Overview

Basic Information

• Taxon OID: 3300006013
• Scaffold ID: Ga0066382_10169757
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 756
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011620	Metagenome / Metatranscriptome	289	Y
F019388	Metagenome / Metatranscriptome	230	N
F029556	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066382_101697571	F029556	GGAG	MSMMKFDDSKIKEIRKRKEQGLPPPPTDGDVVEQSKNAKGGSELIYQRVKERVPEDLWNYFQVILSRVREYEDKPKILWFQDTSKDPEVQFLKDKSHRDKFERFVFPSDWSLEKYNMDLDIEYEKSV
Ga0066382_101697572	F011620	GGA	MFDKVLQAVLRFFGKEKPEPPTEENNESLEALEKVEALDKIGESS*
Ga0066382_101697573	F019388	N/A	TPNEQNPYLVETKNGQILKFNKIDADNEAATKQLDGDDVEVFHDGKLQYRLHGIEQGKLF