Scaffold Ga0066382_10111095

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066382_10111095

Scaffold Ga0066382_10111095

Overview

Basic Information
Taxon OID	3300006013 Open in IMG/M
Scaffold ID	Ga0066382_10111095 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	957
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005516	Metagenome	398	Y
F017398	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066382_101110951	F005516	AGG	MKTFKSYLTEFAQLSTSDYVFDTHTDNSSDLKIPISGPMFKRIWPDTIRATVFHTTDLAGLEKLKKLEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMEADVLVSAKDDIWSIVDKTGRRWVEMSWFANATRTGPKFDKVEKDLNTLIKNLVKKHLTPILG
Ga0066382_101110952	F017398	N/A	LEIEPDVGIGVWYKLQSDFLDDGKKMSLIVADYIDGVNVILKKHKKEIQGAIQGYIVRRGTVKFKHSSGRMVGGDSEMSEWSAWDEQVVDQIKIEKVHTYNTATRPAEWVKDSVIPRLGKIPHKHWKNTAELSTYISQVADAEVRTFGGWARKK*

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