Scaffold Ga0066382

Basic Information
Taxon OID	3300006013 Open in IMG/M
Scaffold ID	Ga0066382_10008459 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006013 Open in IMG/M

Scaffold ID

Ga0066382_10008459 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3650
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3650

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Southern Atlantic ocean

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F006423	Metagenome	373	Y
F006919	Metagenome	362	Y
F012510	Metagenome	280	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066382_100084594	F001493	N/A	MKSFKGYLKEAPAWTQSLSTMLFDLPRAELADVKIPLSPSIFSRVWPKPVRSKVFHLTDFDGVKKLKKMQGKKRSVSAFYNIDPYIISSGIKSEGGYVVEMDGDVLVAAPDDISSQPDKTGRRWLSWSTLIREMGGGSKIKKMEKDIENLLEDILIKNDMGPYKKKLTQNELNKGWSYLGKSVGGKEKSIIIKDYIDGMEKIMKKHSKQLRSLFTDYVDNRELTPDPDSGEFELWDEIVVNNFKIKKIHIGPEFGPDFEDEDDIDGFPFELYQDVGDMADYVTRTSQKGK*
Ga0066382_100084595	F006423	AGG	MKSFKQHVDEKIEFYLDKSKDNTEKYVAHDGDYWYTGKIGMKGGEMFLKFTAISGKNSYFEKAKLKKTSPKEIEKDVGITVDSKKFYKR*
Ga0066382_100084596	F006919	N/A	MKTFKGYLTEFASYSTSELVFRNAGQGTGSSGLMIPISSPMFKRIWPDTIRATVFHTTDLGGLKKLKRLEGGKKTISAFFSMMSRYMETGVATGGGIVAEMEADVIVSARDDIMSQVDNKGRRWVEMSWFEYQTRERSKFSKVERELNDLIRELVLKHLSPILGKDRARREHEFDLWADMKKHMSGDGKALSLAIKDYFDGVEKVIKKNKEVLGDIFYGYTRSKRMTDNSWDEQIVNNIDIKTVHIWPDNYKEYKEEDEDEIKKQITDIKKWPIKTWDATIDLEIYTRKVVAKEIKK*
Ga0066382_100084597	F012510	AGGA	MKTFKSHINELKMEIPGSKGWVLGTKDEPKKLKDKDIIWRSKVHHWDNDVRSDNTRLIIVKNKGKFDMWAKSDKSGKIVFHFGTKPTLDAAKEFASIRKW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066382_10008459

Overview

Ecosystem & Geography

Associated Families

Sequences