Scaffold Ga0066373_10072724

Overview

Basic Information

• Taxon OID: 3300006011
• Scaffold ID: Ga0066373_10072724
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 957
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F064804	Metagenome	128	Y
F089050	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066373_100727241	F089050	N/A	MVELNHNVVSFNSDTLIKGSHGVLVNVYVSKVGSGSNKVQFRN
Ga0066373_100727242	F001625	N/A	MALTISTSDWTSANVRKTLSVQAALVSKLRIYSIKVTFGASDAYATNGVSADLKEGRISTLVAVTPTFTDSKLVVQYDKTNEKIKCFTGSGNGNVLAEVPNASALVNSKIFEFLVIGY*
Ga0066373_100727243	F064804	GGAGG	MDERKSGIMVQLYHNEKLAKARDLVIIFLFGSIVIETITGIELLGAWWK*