Scaffold Ga0066368_10132619

Overview

Basic Information

• Taxon OID: 3300006002
• Scaffold ID: Ga0066368_10132619
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 855
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001992	Metagenome	607	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066368_101326191	F000730	N/A	KKIGCLCLVSELIPPEIVPIVWFACISVTIYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRILHEIDKQIAEQKASGVSDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLSFVRAI*
Ga0066368_101326192	F001992	GAG	MVVQKLLLEEGLRRTKKYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATITGGSWLNIVAGFFNIKFPDTLPEWLTKLFTTGWNGIAFWQILQITAILLVIVEYMQYDRMLKENDKTPNATSQAVFLMIALALSLMVFPQTIQKIRE