NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066368_10126076

Scaffold Ga0066368_10126076


Overview

Basic Information
Taxon OID3300006002 Open in IMG/M
Scaffold IDGa0066368_10126076 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)879
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014746Metagenome / Metatranscriptome260Y
F040137Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0066368_101260761F014746AGGAGGMGLKQPMMYEMPPPPAVDPEVAAKEAESKAKLEAEKKKAISVRMKGRGGTILTGGEGVTEEAQTGKS
Ga0066368_101260763F040137N/ADMGGAARIIRRFISPAPAYTPPPAQMVSAAPAAKATISGSTARVRGQGSGVMGTIMTSAEGLEEEANVSKAQLGGTILKKKKYKV*

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