NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066368_10068352

Scaffold Ga0066368_10068352


Overview

Basic Information
Taxon OID3300006002 Open in IMG/M
Scaffold IDGa0066368_10068352 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1230
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006865Metagenome / Metatranscriptome363Y
F029469Metagenome / Metatranscriptome188Y
F043443Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0066368_100683521F043443AGGLNEKLLELKRKKLQRQILYLRTELEETTFIFQDCLIEFEDEFRDYFKNQSTKDHKKVTTDAPEFDIPREDVNIVFKKIAQKTHPDKLINEDTSSSTYKEKVDMYKEALGSVESRDWSRVIEIAMELGIDVSDVKNDD
Ga0066368_100683522F029469AGGAGMSNKPEHTTYFREIIRRLKEMEVEFRKAPKQPNDMIYGEMDDKIELLELPFPPEMFDRLSSDEKETLFIWLNRRNMPQA*
Ga0066368_100683523F006865N/AVGKIGQIINVNDTLYEVLGIMSVERSNDKGTDYWKERWGADNVLRNGSDYYYCRIIIDAEFEDI*
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