NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081606_1019346

Scaffold Ga0081606_1019346


Overview

Basic Information
Taxon OID3300006001 Open in IMG/M
Scaffold IDGa0081606_1019346 Open in IMG/M
Source Dataset NameEarthworm egg capsule microbial community from the University of Washington, USA - E. fetida Yelm (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3221
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Reproductive System → Egg Capsule → Unclassified → Earthworm Egg Capsule → Earthworm Egg Capsule Microbial Community From The University Of Washington, Usa

Source Dataset Sampling Location
Location NameUniversity of Washington, USA
CoordinatesLat. (o)47.0Long. (o)-122.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077889Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0081606_10193468F077889N/AMSNSVNFYGFIGFITFNIEVHELVYVYSFLVDGILVSNVPRATVRIDIKT*

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