Scaffold Ga0066790_10021704

Overview

Basic Information

• Taxon OID: 3300005995
• Scaffold ID: Ga0066790_10021704
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2807
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6135
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007131	Metagenome / Metatranscriptome	357	Y
F017180	Metagenome / Metatranscriptome	242	Y
F036836	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066790_100217041	F007131	N/A	AIAGALPHTVVCRGARKTTRRFPRRFADEFAASGLDADGLAAFADAWRARVTAPQR*
Ga0066790_100217046	F017180	GGA	MSGMAATPQTPAVDKPKHPLHALTTYELTYYRRRLENAIAFLDKQDPIPPARADLKAALDGVIAEQDDLTKIAAASGEHDLR*
Ga0066790_100217047	F036836	N/A	LGHSGGGATTLRHYADPVPEVDRRAAAYLAQLTAGSAPQGS*