Scaffold Ga0066790_10010254

Overview

Basic Information

• Taxon OID: 3300005995
• Scaffold ID: Ga0066790_10010254
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4141
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6135
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F025325	Metagenome / Metatranscriptome	202	Y
F045285	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066790_100102543	F045285	GGAG	MIPKMSFGLAVAVLLTSSALSQSNTSRIGDDYARAALRAIIYTNQSGITAERISILVDEADVEASTPAEEASLKEINRILGVWISRPISDHQACYLALKMNLKARNGATPEACK*
Ga0066790_100102544	F025325	GGAGG	MLSDGQQRRKKTWEELVAAASMESDPEKLAMTMEEIFAALEERGRTASLSQDPSGFREHPTET*
Ga0066790_100102545	F005268	GAGG	VTRSEETEDQQAWRVLSEAGLVEIRLDEFAERIADVKRIVIVRLRELLDFDNGIEERESAAYSLGTLKGLELKVLANVPPRSDPSEV*
Ga0066790_100102546	F003832	GAG	MQSIAEKLRSEAQWPPEEGEVLSFTTSVGSETATLKEVRWGLVWRDFILEDGRVIPEHRIAGCPQPQVWRKMDEVTDDEREDCEERLLSMAGSGMDPRQRDQSFWAELNQYLAYTYLRYKQASGRVQDKVQETER*