Scaffold Ga0080027_10091145

Overview

Basic Information

• Taxon OID: 3300005993
• Scaffold ID: Ga0080027_10091145
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6139
  • Long. (^o): -149.3145
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005455	Metagenome / Metatranscriptome	400	Y
F042487	Metagenome / Metatranscriptome	158	N
F051357	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080027_100911451	F042487	AGAAGG	MNKWSSVAVSAALVFAGVGASVSAQAHPYLTVGVDVPAVAVVRGFGHAPVYCGPYYYQHGRYWRRDYDRYRFDRFPR
Ga0080027_100911452	F005455	GGA	MQDEAEITISGVKLTHDESMTVRVAIDTLANVLAEGLEESETRALTDRYLESLSRIQTLLESRETRKQ*
Ga0080027_100911453	F051357	AGGAG	MHVSTPTFAAAVMLAALCFGAQASTLIDGPSTIIRGRSAVYYGDLNLDTEQDAKIMLQRIERAAKKACGGHATFSSFTGSLDHTFEECRGEAIQRTVKQLGAPMVTRIYSEAKLREASHRWSTVRYTAA*