NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081539_10164844

Scaffold Ga0081539_10164844


Overview

Basic Information
Taxon OID3300005985 Open in IMG/M
Scaffold IDGa0081539_10164844 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003013Metagenome / Metatranscriptome513Y
F013483Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0081539_101648442F003013GAGGVKTATKRRQKSGGDVIERATRNLARALKDEMRKKEGRVDYEKLRKEGYSERLLEKFQKA*
Ga0081539_101648443F013483N/AMSEDSVLRYTDLAALIQMARARGWPTIKIVRAMSVGLSHAEALKLARNAAPLLDISISEFLRMRKNE*

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