Scaffold Ga0081539_10013350

Overview

Basic Information

• Taxon OID: 3300005985
• Scaffold ID: Ga0081539_10013350
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6195
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000367	Metagenome / Metatranscriptome	1226	Y
F023703	Metagenome	209	Y
F030929	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081539_100133501	F030929	GGAGG	MGDPRRLDNAEQLEILALLEAASSERSAMRAARALAELMRHLNALGQRIAAELPGHDRNSQPP*
Ga0081539_100133503	F000367	N/A	MFVYSTGMQPRDVHDPTLTRPIAAPLERCAEFLGVELDTIREAAAHVEPYVRVDGTKVWSLMQLERQLRPNAYGRVRGGYIARRRPRATA*
Ga0081539_100133504	F023703	N/A	MGPFSKVEGLFTVLMCADCQAARGHGAGPYPVMTRAEMRASLDLLPTWALEQKAAANRQVIAVMRQRLAAGEEVARMYQEPGLAWLERQAEAAEDLIAERHAD*