Scaffold Ga0081539_10001512

Overview

Basic Information

• Taxon OID: 3300005985
• Scaffold ID: Ga0081539_10001512
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39176
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (71.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000938	Metagenome	827	Y
F002070	Metagenome	596	Y
F015967	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081539_1000151212	F015967	AGGAG	MHSRIGWGQAPTTWDTPGWAPMVDPGPGSLHTARSVGRWLWFTVAIGGFLLVAGFAFAHDDPAPGLSVRGLVTIALAAAVVILLTFHRRYGPWPLARALAEYAVVFLLAVLVATTGIPIDQPPPATGKTSGKTAHVAPDQRPALVKTIDDFRDWLAQWREWAGKQTDHHAQAAAPTPAPRLSPSTRRPL*
Ga0081539_1000151213	F000938	AGGAGG	MARRTTWLIDMGDGTWGVCCMACRIGLYRGPKAGADHAAATHYCEPVVPLGRRHRRPA*
Ga0081539_1000151219	F002070	GGCGG	VTRQVDELARHVHRLGNHELNELLLQLPKPRFAALVEVALARPVLPTGLVLRFEPASGVDGWTVLACAPRRPLGTLTRHLDPTGRLVYRALTRAGDPVQPTRTSSWRRRRDAAAALAWVTPASGARCLALAAYVRALPDRAVVQLLGGLPVQDYDRLLDAAYRPAGSAA*