Scaffold Ga0056126_10000903

Overview

Basic Information

• Taxon OID: 3300005984
• Scaffold ID: Ga0056126_10000903
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus manae LIZARD ISLAND
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8672
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062424	Metagenome	130	Y
F083670	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056126_1000090317	F062424	N/A	MLFNTGFIQTLESPGIKMLRFPGVGTPGKRHRSWKTLEKSWNSKVVVLEMLISGANVAN*
Ga0056126_100009032	F083670	AGCAGG	VTYVAGPAESTVDYIIVRQENIAKIHNIKVIPNEECVPKH*