Scaffold Ga0081540_1018953

Overview

Basic Information

• Taxon OID: 3300005983
• Scaffold ID: Ga0081540_1018953
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4202
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F002758	Metagenome / Metatranscriptome	532	Y
F009553	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081540_10189533	F009553	AGGCGG	MTDTREAADAFRELAKKNYAYVAVRVNKSEVREFFDGFLAHVPWVRAVSIVGQEGIKLQLATPWNQLPKGIKVTVKMPRKKFGTLLLDVLRLRAPWAKVGDAVTLLTPRDKLEEFLNLLPDSVKLISCPEESAQSKRRKLI*
Ga0081540_10189534	F000466	AGGAG	MTNVLTYLPKVETFKRWRDEKQTAYQGVVKRDWAPTGRIDFATRLNANSTGADEPSEFKLLVEERRIVESMTGSENLEIQWRLATLKEAKAVVAQYHKYLSQHGLIKTVFDDTLSLPPPKRVS*
Ga0081540_10189537	F002758	AGGAGG	MKVAALATLGVLIALPAEAGDRHRQNHVSPICDNDGRCTTLTVTAATSSFRGRHTGTSERKPHHVVDANGNSMLVTVQTAQGFNITVHPAYASKFLKFFALLKERGYKVPANITRCWAPRGTHVAGSNHYIGAACDIQTGWNRGPAFVYHMDDIVKQAGLYSGCTFRDCGHVEAVRGLHNRAPNLYAAMEKFKSEQSTANYQP*