Scaffold Ga0081540_1001374

Overview

Basic Information

• Taxon OID: 3300005983
• Scaffold ID: Ga0081540_1001374
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21111
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001184	Metagenome / Metatranscriptome	755	Y
F001552	Metagenome / Metatranscriptome	672	Y
F031477	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081540_100137412	F001552	GGA	MRVVVTRIDWDGTMRRRAVDTAGRSDAGRWEELIARALAVRPPYRPAPGGPVYHLRVDEGAVLVAEHDLSGALSDLVTAVLAIGEAM*
Ga0081540_100137414	F001184	AGG	MTSPYDASSPKAAPPADHAGSVLCRLLMDHPEVVDIEILGQLDLPEGIIYSLGVMLPDGRELLIDVGDV*
Ga0081540_100137422	F031477	GGA	MEPEIAGLVRVFNSLTTKQQDGAVRTLSEYFNADSQRRQQLINESQPDRRGKKINLGPVSGVCPYCGR*