 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005983 Open in IMG/M |
| Scaffold ID | Ga0081540_1000524 Open in IMG/M |
| Source Dataset Name | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37413 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | University of Puerto Rico, San Juan, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.402889 | Long. (o) | -66.050054 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044638 | Metagenome | 154 | Y |
| F093936 | Metagenome | 106 | Y |
| F095063 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081540_100052413 | F095063 | GGCGG | MERSGDDVAGGDARTLSFAAYRIDEALLDKLLRYEQTLLDELAQGWSPAAMASAHRLALASSGLSQDVVERALAVLRRFAGNREVAARLRARAGSLDPERADDLQQRLTALDRELRERDDPDTIALLLKHEDTVLDLHRRLSKVLGP* |
| Ga0081540_100052417 | F044638 | AGGAG | VQLVEQIRQADYAGDRQALRDRHAALASAPTGSAPKALVLYWRGFALWRRTINGFNVTPPPDDLAADAEAAGAEFEAALKEDPKLVDAQVGLIGCLGIRMYLHGKQDDETQALIARAKTLFADARALEPENPRLLWVTGPVEWRTPKGSPEDVVDSHQAKAMATYQRGLRAFPAASRPGPEPLRPTWGEAELHMSLAWSYLHRREPDASQAEIHGRRALELVPSWHYMRDVLMPQIEAARRTATR* |
| Ga0081540_10005242 | F093936 | N/A | MRRLTGAALLSALALGCAPGVPTLRPDAWFPPSESTASRRPLDCSDLQPPAPAGSVGDPLDPGRGQALQQPSNLGTGPFRLVWSSTVSGARLEWVAPAVPEAKNLWLLRVGDSGRCVVGTWNAPQLGFQVIRHAFWNEGKLEIVLLGLGPPPRHGWMVLLTDGSGFWSGLDSSGGRPGALVAEQAEFRQEADRLRLVVLDGGRTAALDFDGHQFASRP* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |