Scaffold Ga0081540_1000240

Overview

Basic Information

• Taxon OID: 3300005983
• Scaffold ID: Ga0081540_1000240
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57604
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (75.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092272	Metagenome	107	N
F101407	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081540_100024036	F092272	GGAGG	MRRPQWWAVVLGLVLPGAGIAVAHPVETQEATAAPAEAEASTKADPRDGWRHEFSPAWHMATFWSKDSGSHYTFHSLSIGYLMSVNAAGPFLHLSWVIPLQARQDGRVHSVSSLYQNGGGVDLLLGWQWRKTVTTEIEFEGGPGLHMNALNLGGKPGLTNFNALQLGPGGMTILRWRPGWRPHKVGWTVGAVGALGIDLFDPLRSNDLRIGVTLRMGVLLGVDLP*
Ga0081540_100024037	F101407	GGTGG	MRREAIGAAALLGVGLLACLGPYPNVGEKLDQVDLVNGTSYIALDAGAARILILAPFDGGSAAPFTRIDEQQPRAVQTLQGTYFGDATNRLSVTFSSNALFSLPNEASKPVSDRTGARRTELSPPLQSKVRIDAQTEDLLDLSGSTDIAGHFLALLGRTALITGNDATATACAFHLANLAVESSEARIPGFNSAGMTQYLNRVEPFQGILSGTVSVGLVGLFSPVVTTTYTHYADFEGVALDGAQVSSTNASGDGALTGVLGFRIQRRGLPDLEGQVDYRGVSLTGGNESGDYLVRLDGGTEYAVPTGRRVPPLEECLGL*