Scaffold Ga0075156_10109995

Overview

Basic Information

• Taxon OID: 3300005982
• Scaffold ID: Ga0075156_10109995
• Source Dataset Name: Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1534
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location

• Location Name: Milwaukee, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.023
  • Long. (^o): -87.895
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048174	Metagenome / Metatranscriptome	148	Y
F075867	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075156_101099951	F075867	AGG	MKTRDAALKPSKKHYLQYDAATFEHEGFKTLNGRVSQLALEPRFWSISVNVRTENYDGTGEVKDHFNFKTSERCKLSDLRDQVKKEVLDKDDYLPVCTQCL
Ga0075156_101099953	F048174	GAG	MSDKGQSNNKDVQTGSNIVTGAVLGELERLKEDLDRLHRERDAFSRQCSVMAEENAIWEAESKRLDWMVKNRGRIEWKFGGNCYVTFIHKNEFKATLGSDDTRVEIDRAMEMCK*