Basic Information | |
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Taxon OID | 3300005981 Open in IMG/M |
Scaffold ID | Ga0081538_10117965 Open in IMG/M |
Source Dataset Name | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1283 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Puerto Rico, San Juan, Puerto Rico | |||||||
Coordinates | Lat. (o) | 18.402889 | Long. (o) | -66.050054 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020506 | Metagenome | 223 | Y |
F083867 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0081538_101179651 | F020506 | N/A | GLIARDRLLGFQWVAPTVKALRLVGLDVRGWSFVIPQLAHVHAVGVVRLALEPSIPEGGRWLSERELRREAGKSHVPDAAIELPEDPDPIAGSGLYGEDVDPLPKRVAVEVELTRKGAARLREAWTRPRHGRWQRTVYYAPPEVAGYLTGQLQRIRPRHPIQVHPLPDVPGTSYPRPGGAT* |
Ga0081538_101179652 | F083867 | GGAGG | MTRSTYPAPGHGWQATPGQPIPRAARQPAANGLLLVLLLLVWFSPLSIVAWLLGQAVILLQRRWHWWRFTLASLAGIALVLAVTGPQEALRRHIFVPQHFWQYVALHFGFGPPGTKITVSQFLWDLVATQVWLAIPVGLLAASLSVWNAERAAGGAEWSPFVRRRQRIDQRTRDRKTARLVAKPRDHKLTAPALGVALDGDLATWRQGRYVVPPAQLRGKAMAVVGAPGAGKTIILLRLAYLAGLLG |
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