Scaffold Ga0081538_10083815

Overview

Basic Information

• Taxon OID: 3300005981
• Scaffold ID: Ga0081538_10083815
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1683
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000938	Metagenome	827	Y
F003271	Metagenome	496	Y
F044957	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081538_100838151	F000938	AGGAG	VARRTTWLIDMGDGTWAVSCMACRIALYRGPKAGAERAAAAHYCEPVLPLGRRRRPA*
Ga0081538_100838153	F044957	GGGGG	VSGRIVLHLDRGLGWTKPLFVAGCRTCGTELARSTDQAVAERTARRTRCPVCGTRTARRLPGTTSPTSDVALARGQRELSGRRRWPPARQPTLRSRRTGRR*
Ga0081538_100838155	F003271	GGAG	MTAFLDVLGWEQLTAAEQASALAGACLGLAAWLVARAMFGDRRQR*