Scaffold Ga0081538_10064170

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081538_10064170

Scaffold Ga0081538_10064170

Overview

Basic Information
Taxon OID	3300005981 Open in IMG/M
Scaffold ID	Ga0081538_10064170 Open in IMG/M
Source Dataset Name	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2079
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location Name	University of Puerto Rico, San Juan, Puerto Rico
Coordinates	Lat. (^o)	18.402889	Long. (^o)	-66.050054	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055516	Metagenome / Metatranscriptome	138	Y
F081022	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081538_100641702	F055516	GGAGG	MELRDQDVKPGTREHFIEVTRLQRWGTIQEYVALCRTRGYFTEAFYRKAVTHMERIHVRRMLRQVRDGRGWPTVANIVREGPDGSPERVFMQEELFGPEEYRQVVDYHYRMARHHLFKAQTYREHAKARFGLQLPLFDEDDGDTAVEA*
Ga0081538_100641704	F081022	AGGAGG	MAEPTAQRLRVTFTATRADTGQFVIACEPLAVESTPAIPGSDPGESDAAVAASDPTETEAVIRGSEQDPTLVTGMFAFECQGGVAEAQARDLAQRMTDLLSHLMYTPR*

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