Scaffold Ga0081538_10021455

Overview

Basic Information

• Taxon OID: 3300005981
• Scaffold ID: Ga0081538_10021455
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4714
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002163	Metagenome / Metatranscriptome	588	Y
F021333	Metagenome / Metatranscriptome	219	Y
F031558	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081538_100214553	F021333	AGGAG	MTIQEAINKAIEGGYPKERIDDLSLHVQAHYFLETSFWEALVRALGVEGDFEYIHLDRGEPRKLRQPMWLYYWHRFNSHLIAGKSPESFFATFSSSPEASR*
Ga0081538_100214557	F002163	AGGAG	MTIEEVLKKATEGGYHINGSDGTETSYIGANDEYSAWTRTDNDSSFMVPVEETLLDPQFWQALGRTLGWSEGCDLVILCVHGEEECQHCRGYYWMYQWHCFIQALADGNTPEAFFQHLTSSQTTRKQSA*
Ga0081538_100214559	F031558	AGGAGG	MQDGNPGQDPVCGRCKQKIEMAVRTEAVYQDEMWFHTACHRAGADQLFRAMRLSEVLQEAKRGVEIITAPLLQGDESPV*