NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081538_10014941

Scaffold Ga0081538_10014941


Overview

Basic Information
Taxon OID3300005981 Open in IMG/M
Scaffold IDGa0081538_10014941 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6045
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000230Metagenome / Metatranscriptome1517Y
F042552Metagenome158N
F072725Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0081538_100149413F072725GGAGGMTVPRDEMVKELLKAEQAHQLLSEVERRLAGENTGVEELLSQLEQLERSLPEDDSIRLLIESAVGSARTRSSMKAGSEVARSRSVIGGEISRLRGTIEGIDSRADL*
Ga0081538_100149414F042552AGGAGGMHEQREHLLEELRKAEQALTLLKELEPHLTQSKGKELDGHVRALKQLAQSLPEDHIVRLVIESALEPSNVGTVSRARSAIEGEISTLQGALRYRAT*
Ga0081538_100149418F000230AGGAGMSEQAKKVKHKNIPQWAQGLYYNSGLMSEILIYYDEEAIYIEHKGKESGIVRFTFEMIEGLKKVEEEAPDSQD*

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