Scaffold Ga0081474

Basic Information
Taxon OID	3300005977 Open in IMG/M
Scaffold ID	Ga0081474_131012 Open in IMG/M
Source Dataset Name	Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005977 Open in IMG/M

Scaffold ID

Ga0081474_131012 Open in IMG/M

Source Dataset Name

Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	7526
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

7526

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7330426	Long. (^o)	-110.7089928	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.7330426

Long. (^o)

-110.7089928

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F089165	Metagenome / Metatranscriptome	109	N
F094113	Metagenome / Metatranscriptome	106	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0081474_13101210	F089165	GGAGG	VTVVKKGEEKREITYTREQFEKKYENLYTLFNAIEFAHNKVQLTATKTVEEKDIFDVINQVLEMQRSLSSEASPNDVLGAIKIFAELLKTLTDPKTMEFVKMITTKLAGEKGRE*
Ga0081474_13101212	F094113	N/A	IDEMKNENKISIQNLLLCFVRKTFTFPAMHEWKKKSEFLLIHDEFLPADYDYNNWEKHIEFEEYIEHKLLSTPSRKIISPPETKTVMLTQKEKEFIMKLKKEFNYDTIDDAILHILKNSTGWKMISFISRLLNENVTLKEIDETLGGLGDFIFIIAEQKNDQDEIKIIAEFYPLVHTIDLGKIMEVSKK*
Ga0081474_1310124	F089165	GGAGG	MIVKKGEEKREIVFSDEDLNRKYGNLYTLYNAIEFANNKVQLTSTKTVEEKDIFDVINQVLQMQRSLSSEATPNDVLNTIKIFSELLKTMTDPKTIEFLRMLGTKLGGQKT*
Ga0081474_1310126	F094113	N/A	MAVQVFSSRIKHEIKDKNALAILESLYELYTRCHVTRNYSDVVEKSIDEMKNENEISIQNLLLCYVRKANTFTFPIMREWKKKSEFLLIHDEFLPADYDYNNWQKHIEFEEYIEYKLLSTPTRKIISPPEMKTVMLSQEEKEFIMKLKKEFNYNTIDDAILHVLKNSTGWKMISFITRLLNENVTLKEIDETLGSLGDFIFIFAEQKNDEDEIKIVAEFYPLVHTIDFGKIIEVSKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0081474_131012

Overview

Ecosystem & Geography

Associated Families

Sequences