Scaffold Ga0081474_127368

Overview

Basic Information

• Taxon OID: 3300005977
• Scaffold ID: Ga0081474_127368
• Source Dataset Name: Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 30207
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (54.55%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7330426
  • Long. (^o): -110.7089928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081474_12736838	F075084	AGCAGG	MIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYTQYNGVPCDLVSVFTVETTYADILHMIVNYNSENVSKVLTKMTEMCSTYEVR*
Ga0081474_12736839	F080245	N/A	MIFVWSARVVIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT*
Ga0081474_12736840	F087442	GAGG	MMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNENCLATRL*
Ga0081474_12736842	F076263	GGA	MPSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRNGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEELWGGK*
Ga0081474_12736843	F080247	N/A	MIIWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKERDIYANVSLTDPDTIKEFITMSTYYRKYGVSIPNVLDKIMYRKVPT*
Ga0081474_12736844	F061983	AGGAGG	LKKYVFKVKVVQIKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFNCYYGDVIDVEKLKDVGAIVVKESDGEPLRTMKTLVAKWYNKKLVEEEKAYEVCNTFVT*
Ga0081474_12736846	F085905	N/A	VEEQLSFPSSRLSQFDYVGMNAYWLNARLKYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDSLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVMARYLLPYSVLEVIRRHLKK*
Ga0081474_12736850	F087445	N/A	MSTASSKPTDELVQRLLNMNEYDLKRVFKIIPIDKRLALALDTIQEFQSIQNKFSNLLNGLAMNAPRVKEVVENARRNRKPMERFVDMIMDMVETMLKSKAMSLTDEDREKLREKVKEMMESEE*
Ga0081474_12736852	F076264	GAG	MSAISSAIQSLVNGLQSLFVALIDVFSNAVNAIGNTLASLANPIGYLIGVLAVFGSLISIIYYVFRGKGGVGGLVSGIRSVFTSFF*