Scaffold Ga0081474_124473

Overview

Basic Information

• Taxon OID: 3300005977
• Scaffold ID: Ga0081474_124473
• Source Dataset Name: Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8057
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7330426
  • Long. (^o): -110.7089928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F026309	Metagenome / Metatranscriptome	198	Y
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081474_12447314	F026309	N/A	MSLPAPLNNPNLFIGLVIFIVASILLYLGKLPLSAWTTIVGVLLGYYFGYQHALLKQRSG
Ga0081474_1244735	F006070	AGG	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANADLSVQVIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSPVTVASGSLQQPGVQTVQADFYSTSAERYISLALTYSTAPTTGFVRAHIDLFYEGF*
Ga0081474_1244736	F011233	AGCAGG	MAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPTPTGVPPRFVAEEVVSTRLPVKVS*
Ga0081474_1244738	F027904	GGTGG	MEKYEPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNAAVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPPNSAVTLDEDEWSISVKSGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0081474_1244739	F067921	GGGGG	MYFERINDKILRNGQYLLVSYSGAKNPLQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTGDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIIPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVSLSYKEIYGG*