NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081474_124424

Scaffold Ga0081474_124424


Overview

Basic Information
Taxon OID3300005977 Open in IMG/M
Scaffold IDGa0081474_124424 Open in IMG/M
Source Dataset NameFerrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8823
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameOne Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7330426Long. (o)-110.7089928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F070317Metagenome / Metatranscriptome123Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0081474_1244244F070317GGTGGMQTTASNMSAMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIKDPATLSQKAMEFIQSRGDDIFYLFQCTTRGGRNVKLLVRQSFDPRSTFYQLMKKYKTIKVGDEVNVFYNPEKRRYDFLL*
Ga0081474_1244245F077502GAGMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEIVYRSIEQTIGTLTEEIKEQVDAYFLKKLNDIYDKYYE*
Ga0081474_1244247F077499AGGMMADLFIFPNESLKPVSYPNITNAEIIFVLTISIPIGGHPESDTPMEEKMKFLSTYTPLEFQKLYYMKTIDKALDILKHLLYTREDNVLFEIANKINSLYDVKELINKVKDVECAKDLKTLNVTLTEAKRYIYPDISLSRYASSQAKQLGIKKYEYYARLFQCYVETDKNLDMLTLFRVSNLVFNFLRINNLSHIIKKMQFKDENINRIAEKIKQRVKITLDAMTDRKPIEADINVLNSITIRIKEIDLG*
Ga0081474_1244248F056742GGAGGMFITEVEKVYGVKIKSCEDFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVIHTLQHMRQLGYKPLTYEENI*
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