Scaffold Ga0081474_122090

Overview

Basic Information

• Taxon OID: 3300005977
• Scaffold ID: Ga0081474_122090
• Source Dataset Name: Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16579
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7330426
  • Long. (^o): -110.7089928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011233	Metagenome / Metatranscriptome	293	N
F026924	Metagenome / Metatranscriptome	196	Y
F027904	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081474_1220902	F011233	GAG	LAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSSEYTVLNGQFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPTPTGVPPRFVAEEVVSTRLPVKVS*
Ga0081474_12209024	F026924	AGGTGG	MSVSKVCWRQHYKFEASKIVHLGRHGFHIPVIVYGRDSEPEKAQEDLCINVVGIYEPIGSFRENQLILPPKKGVKVEDEGGGRISKG*
Ga0081474_1220904	F027904	GGAGG	VEQKYEPPDYDLFNLNNGSTSIGTTAVTLLYEGQSNAAVYAPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIKAGYALAAVSSAASSANVFAKCYFTKGTGSPA*