Scaffold Ga0081474_120772

Overview

Basic Information

• Taxon OID: 3300005977
• Scaffold ID: Ga0081474_120772
• Source Dataset Name: Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15255
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7330426
  • Long. (^o): -110.7089928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F023140	Metagenome / Metatranscriptome	211	Y
F030159	Metagenome / Metatranscriptome	186	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081474_12077218	F021133	AGGTGG	MSKRDDLIRQIYENGNYVIKRICEMEPNDDMANFSATDCIIGSANTHLALKIAREKGYPQDVIEYLENQSKQEQWHCQLHIGKSPKPYDFKVAQKHREVLLKYGVYVWMGVMPLLGEKIALAKAICWRRNDDPHFANKFATVDEYYHTTYPLLLLYKYASEEELEKIVELQKEYIEKIFNL*
Ga0081474_12077219	F023140	N/A	MFIGLVTVPVYIVLKSFPFLAVFGVGVLTTLTVLILFFFFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLTYHVTRWLYVKKGRLNTPNLRER
Ga0081474_12077220	F076262	AGGTGG	VSFNPVIRGSYTLASPQTVSVAASGSATVSISFTPLGAGSLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNITINNSNTTAVSVVVWALFIEVA*
Ga0081474_12077221	F008949	AGGAGG	MSSQTVTLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPVNKTIDVKFVCNKYKQVAVPRTDPLSPPVFQTVQKTIQECVEEWYAQHKSVYEVA*
Ga0081474_12077222	F011097	N/A	VIKIIRDVPLYTSGGTDPFTSFYSLPTGGSPITANGSNYQVLRFHPNYARLHIYITSLSGTSPSIQFTVGSYVGANYYTLPPITSPQYVYVVGNGNKTIITYLNTSNVVLQQVELPYNIFLNGCYVSWSVSGTSPSISAYIHFEFEDEEEGGE*
Ga0081474_12077223	F030159	N/A	MGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYLDKSAISPKGKTLVTVPPLIFGQTSPGGSYYVISGYNSFNTIYRGVVAHTFGKKYARVYLNINAINAGFVNIYTRYRSRSAPDLQQMYGNSPSSNSTYQPVLEGNFGTLVYATDYSYNMPYNLGYSRTSKFRVDGQVLWVNIRQSSSPAFIELEGD*