NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066370_10275514

Scaffold Ga0066370_10275514


Overview

Basic Information
Taxon OID3300005971 Open in IMG/M
Scaffold IDGa0066370_10275514 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042384Metagenome158Y
F049043Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0066370_102755141F042384AGGAGMGLMPVYYTTTKLSGKRKSSVRNQRLNKEHEKWLRGMGIDKPWKPKKEVLKISAKKTERYQSVGNGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSK
Ga0066370_102755142F049043GAGGMKRNNIEEMHKQMFILVNLLKKDGHDPLAIAGCMLAGAVQIYQAELGEDTAFQLLDQIANGGDDDIDIDLDVDKETIH*

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