Scaffold Ga0066370_10023453

Overview

Basic Information

• Taxon OID: 3300005971
• Scaffold ID: Ga0066370_10023453
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1797
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003043	Metagenome	511	Y
F013945	Metagenome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066370_100234531	F013945	N/A	MFNLSTQEVVLSIEKSPLKIVRGILYQEYSNFFGNTINLNFGKKENFEKLENQTQLNRLKLRDDDIDLKKLKIFFMNSNITQALEKKFKSKFKFDSVDVWIDGKGYKLSPHVDDPRIKLHLQIYLSNDNEGTSLYDSDGELLYTFPFKANYGYALYNNIYSKHGVEEIEKDGRISLYVRYS*
Ga0066370_100234532	F003043	GAG	MTILITGGNGNLSNCLKEYIDGDFYGKDMLDLTDRNCIKNLPLYDILIHTATGTNINTNLQLLYSKAKKIFAFTSKRGTFLNWKQADHLEYGIEKLNLNFITYRHNLQNRNAQLFEPGHMESIEHYDAVAKKFSELYKNWKFEKNMIYDLSQNGYIGY*