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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005971 Open in IMG/M |
| Scaffold ID | Ga0066370_10000109 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15585 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (32.61%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Atlantic ocean | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007770 | Metagenome | 345 | Y |
| F016956 | Metagenome / Metatranscriptome | 243 | Y |
| F039679 | Metagenome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066370_1000010940 | F039679 | GAG | MSAKDSHLTIREDLIEEGLSVPVWFLDYKEDTHVEDTPTLDIDCDYCTDGEELNDEGANIIVRITDPSRKDQYGNPWKDRLAFAMSVDFDWN* |
| Ga0066370_1000010942 | F007770 | N/A | MGIMSGEGLSVSFRRTQKTTKSNSELLEEFQSIIYRSRVMKHMKWYGKAHTLDILEHGDDNRQKFEQEYVAIKDTFQFEISVHESWYEDADLYESHEVEDSFVSLARKFAENNNLMYFPNGFPAEWIETETADGERCWNHYNVKPDDKNIDKICEVWHDYGMATLKEDKKEFWDEARDKIKTLMNQEEALKY* |
| Ga0066370_1000010943 | F016956 | AGAAG | MINTIETWQAPTKARLAIIDLALAHIKKVEADPEVETDGDNFDYWNSYQLEDGTYIDYNVYCGDDVGEFTWDNEYKYTDPSEWSWDVACYAVDPPTKDNPHHQIDTDRTNYLFSYNKKGNKEVVFEN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |