Scaffold Ga0066369_10035347

Overview

Basic Information

• Taxon OID: 3300005969
• Scaffold ID: Ga0066369_10035347
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1810
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065858	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066369_100353472	F065858	AGG	LNEIRLKTFRDNLPEKAITKSQLAKIESRLPELHRAKAIIGHSTSQASYALQTLNMLDDSPMSRMKQCLSNIEHKYQAVKEAYFKIEKDRLEIKELETNKPVSESSRLKIRENETNIESVQNGMGNALREIGMFQDMYDAIRKSNNIPEVWTEHDYEKQEIANMVRRSFRIGIQSLSNGHSVSIAAVEFWEQLGIHPQSAEAHCRNYLQQVDKIIKEGKEPDVRVMYEFLDGMAERFKDSYKFALDRIGLKELGSEEFRIGS*