Scaffold Ga0081529

Basic Information
Taxon OID	3300005964 Open in IMG/M
Scaffold ID	Ga0081529_130385 Open in IMG/M
Source Dataset Name	Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	7242
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (58.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7242

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (58.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Echinus Geyser, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7220558	Long. (^o)	-110.7021057	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Echinus Geyser, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.7220558

Long. (^o)

-110.7021057

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F076263	Metagenome / Metatranscriptome	118	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081529_13038510	F061983	AGGAGG	LKKYILKVKVVQIKLVNEEDVLSEQEFEHVKKMRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVTEGDGLFDCYYGDVIDVEKLKDVGAIVVKEKDIQPVRTMKTLVAKWYNKKLVEEEKAYEMCTKFIM*
Ga0081529_13038512	F076263	GGA	MLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTMKVSSREQLYRRLFPEYSPEYSGNYTEEFWGGE*
Ga0081529_13038514	F087442	GAGG	MMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTIMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNENCLATRL*
Ga0081529_1303854	F087445	GAGG	MSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNAPRVKEVVESARRNRKPMDRFVGMIMDMMETMLKSKAMSLTDEDKAKLKEKLKEVIKNEE*
Ga0081529_1303857	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSTSLKAPIIAQLAVEFIGIAMAYVKASNEGDNSYALTGRVAQIATLRATHIIHATTLSCGQVGEIINGMLKKLSGVTADPLTFTEDDGICKATVANPLTKLSVASAST
Ga0081529_1303858	F085905	N/A	MEEQLSFPSSRLSQFDYVGMNAYWLNTRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLQVIRRHLKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0081529_130385

Overview

Ecosystem & Geography

Associated Families

Sequences