NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081529_125438

Scaffold Ga0081529_125438


Overview

Basic Information
Taxon OID3300005964 Open in IMG/M
Scaffold IDGa0081529_125438 Open in IMG/M
Source Dataset NameFerrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1971
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameEchinus Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7220558Long. (o)-110.7021057Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0081529_1254383F047176GAGGVSAVATRIFRFYISLNAGQANNGASGNPSPFVITAPSGINRRIVEIRPWGTQPFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSSSGTFGVDVVVEESALTGGGAAAPAAPAA*
Ga0081529_1254384F033508N/AVLYDLFVTAVPAYGYADIAVGTRVFMRIPFGAALCTTVYSPGLKVAGKGFLWGLSDLFGAEHLPNAAEDEDINITLNAAAQRIDAYYAEIKPEDVSSHSVPGGSDAKIKPFIEILDTLVTTPGNGINVLNENMPTGLGLLDANGRVKATTQFTLLTAFSDFVYSGTNFTEYARLHIFDEDEELFTPLNHEGLLIDNSVTYPDLFMDWPNRRYWKPDQPYVFKPNHQISVKADVPAVTGTGSTLRVALIGVRERLG*

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