Scaffold Ga0066364_10011747

Overview

Basic Information

• Taxon OID: 3300005960
• Scaffold ID: Ga0066364_10011747
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2604
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F044551	Metagenome / Metatranscriptome	154	Y
F087331	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066364_100117473	F005533	N/A	MYTKNETALLTFISNTNNQFYYIGEDNDKVAPVDVKKFTQYCVDFIDSLEIDHDGE*
Ga0066364_100117474	F087331	GGAG	MTESRLWEYPEDNPYGECSYNGKVEVYYNMTSYLNDDELNKIWEIVGNACDRNNIDTGGDQELSVRVYDEINTEDT*
Ga0066364_100117478	F044551	AGGA	MRPYFLYILIGLVFLSLIRTSLKIDRSERNNRLYEELCKVDKEYCR*