Scaffold Ga0066364_10002548

Overview

Basic Information

• Taxon OID: 3300005960
• Scaffold ID: Ga0066364_10002548
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5037
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F059072	Metagenome / Metatranscriptome	134	N
F061924	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066364_1000254813	F061924	GGAG	MDIQHKVTLTDTEITSLVNFIEYWNDVQQADQDLLDNIAKKLDNTIIRHREKVIKAQSKRPKEEW*
Ga0066364_100025483	F059072	GAG	MNQLDQTIEDLKFCVETLGMNDEQVEEFMDITGQFGVRPEYFSNEFIFLTGRGLEEDGKLHDPDYLNIAVFNAMFF*
Ga0066364_100025487	F004869	GGAG	MSYDTEHYYAVQTFLEDDELIKIWNIIEIAMNREGYDVENAELSMRLYDSELEENIEHDMENLLGSLSEGKDVESMGVTDEKVSPTHRRKDLDLL*