Scaffold Ga0081534_102860

Overview

Basic Information

• Taxon OID: 3300005959
• Scaffold ID: Ga0081534_102860
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4186
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028973	Metagenome	190	Y
F032562	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081534_1028601	F032562	AGGAGG	VSEEKESKGTLLSEDRLSVKTFADTNHNTTRYFAEIEVNGKRITSEKHASTDLFKDFERTVESLYRKAEILDELSSPRAAEALTEDMLNDIAELVLLTRALLDKIKSWRLWKREP*
Ga0081534_1028607	F028973	N/A	VTEEEEKRAQETVDEIIRELEEHHANGDWDKFFDDEVLDVLLMVTPDKEDILGFSILLSYGGPTIEFLCDRGDGKIIYGYGDVEVKKDVDPEICDDIIDYLDS*