Scaffold Ga0081534_102382

Overview

Basic Information

• Taxon OID: 3300005959
• Scaffold ID: Ga0081534_102382
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4777
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038746	Metagenome	165	Y
F067919	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081534_10238210	F038746	AGG	MIRKGNKYIMIIKTPKDLEDIRNNIDKYKNELKDGELIEVQIAKSAKYMLKMTLSKEGIKYEISGDDKKHVLTIENKEDAVALQKLIQILLAIAFNKPN*
Ga0081534_1023828	F067919	AGG	MTARSLSRGKELILINKGDEIEFLIDNVDDGRVWVIKPEYHVKKGIMILEKRNGYIIRLIEKDLRKLGVRNMNELIELIRTRPSETVESLIGEKVKISKVTVKDLGSLNAEE*