Scaffold Ga0081534_100051

Overview

Basic Information

• Taxon OID: 3300005959
• Scaffold ID: Ga0081534_100051
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44952
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (43.75%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Monarch Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081534_10005145	F080245	N/A	MIFVWSARVIMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVIKLDDDLLKKLEETSIEDLNYPLNTISHVFT*
Ga0081534_10005147	F081547	GAGG	MSYLRGVFVNFGEETYYLSCGIVKGGTLDPETYTVNNPELMMVRLGRDLYIVTNDMKQLIPIEPIRQLLASETSKVYNEAMAQGNEVKPI*
Ga0081534_10005148	F076263	N/A	MVSLEDLSAVLDDLEDLCARLPEGVTFHPTLELRRNYANEEATYIKFDCRNHRYVLTIVREGVAKTTRLSSREEMFRRLFPDYMGEGII*
Ga0081534_10005149	F080247	N/A	MIVWGKLIECLLDTDVNYLNGELFSNPLRIKGKFLVFGNLYTFERAISETGTEQVCVPIDATFMAYYEGMVAIMSFYLKEREMYANISLTDPETIKGFVNMSSFYKKYGISIPNLLDKIMYRKVPT*
Ga0081534_10005150	F061983	AGGAGG	LKKFMIKVTVVPINLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVRKWMHFYTITAVSEGGGLLDCYYGDTINVEKLKNVGAIVIGDKDTQPVKTMKTLVAKWYNKQLVYEEKAYEICNKFVT*
Ga0081534_10005152	F085905	GGAGG	LSFPSSRLSQFDYVAMNAYWLNARLKYFTDPLLYALATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQSIMKSLVDFMNDKLKILDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDAESVFQGIVAGHLLPFGVLETIRRYAKR*
Ga0081534_10005153	F063848	N/A	VAKKRRSVHDPVLSVIHYQEQLEKMAKAYEKSATRRNQRAVNGFSILKQVQETVRDYLNQASEAMKKPIIAQLGVEFLGVAMAYLKASNEGFSSYALTGRVAQIATLKATGVVNGTELTCAQVGEIINGMLKKVSGMTADPLTFTENDGICEATPANPMPKLSIASPSTGYTVSMNDILKAKSPEEVLMGK*
Ga0081534_10005156	F087445	AGG	MSDYELKRIFRMIPIEKRLMLALDTIQEYQSIQAKFNSLLDGLAMNAPRVREVVESAKKNRKPIDRLADMFMDMMETMLKSKAMSLTDEDRAKLKEKLKQVMESEE*
Ga0081534_10005158	F076264	AGGCGG	MSSISSAIQSMVNGLQNLFTAIVNVFGCAINAIGNTLSSLAQPIGYLIGVLSVFGSLIAIIWYVFRGRGGIGGLVGSIRNFFTSFF*
Ga0081534_10005168	F070317	GGA	MSNLEELKELNLEKTYKDAQEGEVCTVNKIYKGKLIDIISLIKDPATLSQKAMEFIQRRGNDVFYVFQCTTREGREVKLLVRQSFDPKSTFYGLMKKYKTIKVGDEINVFYNPEKRRYDFVL*
Ga0081534_10005169	F077502	N/A	MTDVAHIVLWVEQKLPEEAKLSELIDNIFSLITEIILNNLSQGKQPITFQTVQQVANAFKEMIYKSIEQSIGTLTDEVKSQVDAEFFKRLSSIYDKYYK*
Ga0081534_10005171	F077499	GAG	MADLFIFPQESLKPINYPKITNAEIIFILTISVPIGQHPNDDVPADDKLRFLETYMPLEFQKLQYMKTIDKALEILKYSLYSRESNVLVEIAEKINDTYNVKKLTEKIIDAECVKDITTIKVTLTEAKRRIYPDISLSKYVSANAKQLNMRKSEYYSRLFQCYIEQDNELNMLTLYRVSNIVFNFIRLNNLSHLIKNMKFKNEKIERLAEKIKQRVNITLEAMAEKRIAQTDENLLNSITIRIKEIDLG*
Ga0081534_10005172	F056742	N/A	LKLADCRYKCKQTYFRKSIFVKMFAKEVEKTYGVKLKTCEDFCKFYVLFLSVAEMLYGKHYNYGIFKAIVRGKPNLYMCVKCNQPFTAEESITHTLQHMKTLGYKPLAYKEEI*