Scaffold Ga0081473_138302

Overview

Basic Information

• Taxon OID: 3300005958
• Scaffold ID: Ga0081473_138302
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Cistern Spring, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4690
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → unclassified Sulfolobales → Sulfolobales archaeon SCGC AB-777_K20 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park, Wyoming
• Coordinates
  • Lat. (^o): 44.7230812
  • Long. (^o): -110.7040247
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067919	Metagenome	125	N
F070689	Metagenome	123	N
F103565	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081473_13830210	F103565	GAG	VVVCVVFNPFTYDAQIIYVSDTIINAIIYAREIAKKLLEKEKFKGYKAICKVPNYSTNNIPTYVLLRIKGKIGIPVAVGDDVKRLFEVSPYVKVIVVPALTTAIRTPEEALALLA*
Ga0081473_1383022	F067919	GGGGG	LSMRSLSRGKELILINKGDEIEFLIDNVDDGRVWIIKPEYHTKKGIMILEKRNGYIIRLIEKDLRKLGVRNMNELFELIRTRPSETVENLIGEKVKVSKVVIKNLNKKS*
Ga0081473_1383027	F070689	GGTGG	MTLEVSYNVYRRIIQFSKTSDKPIPILRYKLPDGISKGDVIKIRSIQNTSRTKTLMAEVVDIKKYDVNRDDVPYDELKPIYENYINVIPKLGQVVIVYVKPINF*