Scaffold Ga0081473_138232

Overview

Basic Information

• Taxon OID: 3300005958
• Scaffold ID: Ga0081473_138232
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Cistern Spring, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 37393
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park, Wyoming
• Coordinates
  • Lat. (^o): 44.7230812
  • Long. (^o): -110.7040247
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013613	Metagenome / Metatranscriptome	269	Y
F076880	Metagenome	117	N
F077496	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081473_13823216	F076880	GAGG	MAPEKAVRAFVLRIVKGYRAFLRTEDLFPNDPWAHASDLADRLYYAAYSYTDSSEEAELLRRLAQVSYNDFNELKAVWDTFGESQRKRAFRQLLYAVAKIGYEELLKTIANSWELKTNADKRRQVIDAFKRYITDDHINRRMRLTVALADVFWPDDKARKESVGRIVALWNGLLLDSFIPRDKVEKLIEKHILSIEAPKAVEGTAETR*
Ga0081473_1382322	F013613	AGGAGG	MPRPRKYPDRGVTLTAYVSRELYERIVGLARSRGLSVSEVVQELLMKGLEGSVAVAADPPDPPEDALHVALKGLEPLERERVLQFMKGLEDAEAKLAKLGPNVRQTRTGRPTLLDVVNQQEVAKLKGTVVDLKRTYERSIKRIVRDPAALNIIGERLLRLMKELGVPP*
Ga0081473_1382323	F077496	GGTGG	LSAPQEEVGARLGRRKKWSGDAVIMTIYIPLDIKKELEARAAARRKSLSEYAVSLILKGLEAEKAEEANKDAKAEEVP*