Scaffold Ga0081473_135268

Overview

Basic Information

• Taxon OID: 3300005958
• Scaffold ID: Ga0081473_135268
• Source Dataset Name: Hypoxic/sulfidic aquatic microbial communities from Cistern Spring, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3808
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park, Wyoming
• Coordinates
  • Lat. (^o): 44.7230812
  • Long. (^o): -110.7040247
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081473_1352684	F051572	AGGGGG	VRTFADVVLEGGCKRSLQFLKARLDLCVLAALVKAVPAGSMVKLRPGLVWRLAEELAAAAGRDRERVRNALLKRAGEVLARLRRELGDKAPAEALLARLAELFLEELEA*
Ga0081473_1352685	F038745	N/A	MDRAVAVACGELMQASLAFSAYHPLCSGGPPCAFAEAVERLVRRAASARGAEELVEVMGGRVRLEGLGLPAPALEALAEGLGPEPRWLDALAASFFRLYLSLGRRRRMDGRDLALALCLWAQKRRREDPGNPLWRAAELEPDRLYTEEEAREALKIEEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV*