Scaffold Ga0073922_1003294

Overview

Basic Information

• Taxon OID: 3300005955
• Scaffold ID: Ga0073922_1003294
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1833
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F015354	Metagenome / Metatranscriptome	255	Y
F026825	Metagenome / Metatranscriptome	196	N
F028111	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073922_10032941	F001272	N/A	CRYFRRMIKIELSTEQVNSLLQLIDIAIKAGGYQNAKVGVPLADIILDAAKSQAPLAN*
Ga0073922_10032942	F026825	N/A	MTDHHAFIRDISIGVGGPIIGILGNAVLSDPHLKTASLALGAFAALLTCVVKAVELYRKLKNDK*
Ga0073922_10032943	F015354	N/A	MNANLASLIRHILTAAGGFLVAKGLASADQVGELAGAAVSISGVAWSMWKNKQSAAASPAKQTE*
Ga0073922_10032946	F028111	N/A	QERDALSERVRILDVERHPEFVKKYEGKISGVFDSVKNLVGSDGERLVGLLKSPESDYRNSQIDDIVESLSPSKKAKLGALIVKYDEINGERASEISEAKADYDAIISKYQQDNEEGTKAALESATKTWAKVSENARALEIFEPREGDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELSKFRGSEPGVTSKATGGGGSRPANASSAKSEDFVASVMKSLGR*