Scaffold Ga0066383_10196274

Overview

Basic Information

• Taxon OID: 3300005953
• Scaffold ID: Ga0066383_10196274
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 597
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y
F041259	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066383_101962741	F005148	N/A	CKKCELKFYDEWNLLSLDSLKMCMLCANKYVNKQTIKMKYNVE*
Ga0066383_101962742	F009404	N/A	MSSDEPQTIQAKGESLVKHCPICGVEFTEIVLTNRWIKCESCEYELQVKAKIRE*
Ga0066383_101962743	F041259	GAG	MNKSRVARDLYRKVFNDNLINLSDGDARKQIVREFLNDPVNKKAGWHQKDARFFRLAFQKVAKENNFNVMSINMTPTPSRSKTQKGTMNINVKSKQKNPTPM